Johanna S. Hardin

2018

Hardin, J. “Fun, Not Competition: The Story of My Math Club,” Journal of Humanistic Mathematics, 8(1): 350-358, 2018.

Pan, Y., Duron, C., Bush, E., Sims, P., Hardin, J., Radunskaya, A., and Gutmann, D. “Graph Complexity Analysis Identifies an ETV5 Tumor-Specific Network in Human and Murine Low-Grade Glioma,” PLOS ONE, 13(5): e0190001, 2018. 

Hardin, J. Fun, not competition, inspires this math club, Journal of Humanistic Mathematics, in press.

Pan, Y., Duron, C., Bush, E., Sims, P., Hardin, J., Radunskaya, A., and Gutmann, D. Graph Complexity Analysis Identifies an ETV5 Tumor-Specific Network in Human and Murine Low-Grade Glioma, PLOS ONE, in press.

Hardin, J.  Dynamic Data in the Statistics Classroom.  Technological Innovations in Statistics Education, 11(1), 2018.  (Dynamic Data in the Statistics Classroom paper @ arxiv.org, Dynamic Data in the Statistics Classroom full worked-out examples)

• Dynamic Data in the Classroom (eCOTS 2016)
• Dynamic Data in the Statistics Classroom (useR 2016)

2017

*Evans, C., Hardin, J., and Stoebel, D. Selecting between-sample RNA-Seq normalization methods from the perspective of their assumptions. Accepted, Briefings in Bioinformatics, 2017. (paper @ arxiv.org)

• Tutorial on RNASeq Normalization and Differential Expression (Computational Genomics Summer Institute @ IPAM, 2016)
• Assumptions in Normalizing RNASeq Data (Computational Genomics Summer Institute @ IPAM, 2016)

2016

*Coleman, J., *Replogle, J., Chandler, G., and Hardin, J. Resistant Multiple Sparse Canonical Correlation. Statistical Applications in Genetics and Molecular Biology;15 (2): 123-38. 2016. (paper @ arxiv.org)

2015

Hardin, J., Hoerl, R., Horton, N.J., and Nolan, D. Data Science in Statistics Curricula: Preparing Students to `Think with Data’. The American Statistician, in press, 2015. (paper @ arxiv.org)

Hardin, J., Sarkis, G., and *URC, P.C. Network Analysis with the Enron Email Corpus. Journal of Statistics Education, Vol 23:2, 2015. (P.C. URC stands for the Pomona College Undergraduate Research Circle whose members for this project were Timothy Kaye, David Khatami, Daniel Metz, and Emily Proulx.) (paper @ arxiv.org)

2013

Hardin, J., S. R. Garcia, and D. Golan. A method for generating realistic correlation matrices Annals of Applied Statistics, Vol 7. : 1733-1762, 2013. (paper @ arxiv.org)

2012

*Brieger, K, and J. Hardin. Medicine and Statistics: the inextricable link Chance, 25 : 31-34; 2012.

*Head, A., Hardin, J., Adolph, S. New methods for estimating maximum performance and the correlation of sample measures, Environmental and Ecological Statistics, 19: 127-137; 2012.

2011

Karnovsky, N.J., *Brown, Z.W., Welcker, J., Harding, A.M.A., Walkusz, W., Cavalcanti, A., Hardin, J., Kitaysky, A., Gabrielsen, G., Grémillet, D. Inter-colony comparison of diving behavior of an Arctic top predator: implications for warming in the Greenland Sea, Marine Ecology Progress Series, 440: 229-240, 2011.  DOI: 10.3354/meps0935.

Grosfils, E.B., *Long, S.M., *Venechuk, E.M.,* Hurwitz, D.M., *Richards, J.W., *Kastl, Brian, *Drury, D.E., and Hardin, J., 2011, Geologic map of the Ganiki Planitia quadrangle (V-14), Venus: U.S. Geological Survey Scientific Investigations Map 3121.

2010

*Richards, J., Hardin, J., Grosfils, E. Weighted Model-Based Clustering for Remote Sensing Image Analysis, Computational Geosciences, 14: 125-136; 2010.

2009

Hardin, J., Wilson, J. A note on oligonucleotide expression values not being normally distributed, Biostatistics, 10: 446-450; 2009. (full manuscript at Supplementary Material to A note onoligonucleotide expression values not being normally distributed)

2008

*Yiu, G., *McCord, A., *Wise, A.,  *Jindal, R., *Hardee, J., *Kuo, A., *Yuen Shimogawa, M., Cahoon, L., Wu, M., Kloke, J., Hardin, J., Mays Hoopes, L.L.; Pathways Change in Expression During Replicative Aging in Saccharomyces cerevisiae, Journal of Gerontology, 63A: 21-34; 2008.

2007

Hardin, J., *Mitani, A., *Hicks, L., *VanKoten, B.; A Robust Measure of Correlation Between Two Genes on a Microarray, BMC Bioinformatics, 8:220; 2007. (R code: biwt.r)

Adolph, S., and Hardin, J.; Estimating Phenotypic Correlations: Correcting for Bias Due to Intraindividual Variability, Functional Ecology, 21: 178-184; 2007.

2006

*Wise, A., Hardin, J., Hoopes, L.; Yeast Through the Ages: a statistical analysis of genetic changes in aging yeast, Chance, 19, 39-44; 2006.

*Hardin, J., Hoopes, L., *Murphy, R.; Analyzing DNA Microarrays with Undergraduate Statisticians, Proceedings of the Seventh International Conference on Teaching Statistics, 2006.

2005

Altman, N., Banks, D., Hardwick, J., Roeder, K., Craigmile, P., Hardin, J., and Gupta, M.  The IMS New Researchers’ Survival Guide, Institute of Mathematical Statistics; 2005.

Hardin, J., Rocke, D.; The Distribution of Robust Distances, Journal of Computational and Graphical Statistics, 14: 1-19; 2005.  (R code: to estimate the MCD – mcd.est.r and to estimate c and m – cm.r.)

Hardin, J.; Microarray Data from a Statistician’s Point of View, STATS, 42:4-13; 2005.

2004

Hardin, J., Waddell, M., Page, D., Zhan, F., Barlogie, B., Crowley, J., Shaughnessy, J.; Evaluation of Multiple Models to Distinguish Closely Related Forms of Disease Using DNA Microarray Data: an Application to Multiple Myeloma,  Statistical Applications in Genetics and Molecular Biology; vol 3, article 10; 2004.

Hardin, J., Rocke, D.;  Outlier Detection in the Multiple Cluster Setting Using the Minimum Covariance Determinant Estimator, Computational Statistics and Data Analysis, 44: 625-638; 2004.

Pauler, D., Hardin, J., Faulkner, J., Leblanc, M., Crowley, J.; Survival Analysis with Gene Expression Arrays. In Handbook of Statistics 23: Advances in Survival Analysis, eds. N.Balakrishnan and C.R. Rao, Elsevier Science: Amsterdam; 2004.

2002

Durbin, B., Hardin, J., Hawkins, D., Rocke, D.;  A Variance-Stabilizing Transformation for Gene-Expression Microarray Data; Bioinformatics, 18: S105-S110; 2002.

Zhan, F., Hardin, J., Kordsmeier, B., Bumm, K., Zheng, M., Tian, E., Sanderson, R., Yang, Y., Wilson, C., Zangari, M., Anaissie, E., Morris, C., Muwalla, F., van Rhee, F., Fassas, A., Crowley, J., Tricot, G., Barlogie, B., Shaughnessy, J.; Global Gene Expression Profiling of Multiple Myeloma, Monoclonal Gammopathy of Undetermined Significance, and Normal Bone Marrow Plasma Cells; Blood, 99: 1745-1757; 2002.

1999-2000

Hardin, J.; Multivariate Outlier Detection and Robust Clustering with Minimum Covariance Determinant Estimation and S-Estimation.  Ph.D. thesis, Statistics; University of California, Davis.  2000.

Coleman, D., Dong, X., Hardin, J., Rocke, D.M., Woodruff, D.L.; Some Computational Issues in Cluster Analysis with no à priori Metric; Computational Statistics and Data Analysis, 31: 1-11; 1999.

*indicates work done as an undergraduate student